PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_15A7BB684.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 328aa    MW: 34596.9 Da    PI: 10.667
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_15A7BB684.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31236293359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h+
  Traes_2AL_15A7BB684.1 236 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERALDDPAMLVVTYEGEHRHS 293
                            9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.9E-17190232IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.4E-32222293IPR003657WRKY domain
PROSITE profilePS5081130.125229295IPR003657WRKY domain
SuperFamilySSF1182903.53E-26232293IPR003657WRKY domain
SMARTSM007744.6E-37234294IPR003657WRKY domain
PfamPF031063.6E-26236292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAVDLMGCYT PRRADDQLAI QEAATAGLRS LELLVSSLSG AAPSKAPQQH PQQPFGEIAD  60
QAVSKFRKVI SILDRTGHAR FRRGPVQSPT PPPPAPVAPP PPPPRPLAVV EPARPAPLTV  120
VAPVSVAAPV PLPQPQSLTL DFTKPNLTMS GATSVTSTSF FSSVTAGEGS VSKGRSLVSA  180
GKPPLSGHKR KPCAGAHSEA NTTGSRCHCS KRRKNRVKTT VRVPAVSAKI ADIPPDEYSW  240
RKYGQKPIKG SPYPRGYYKC STVRGCPARK HVERALDDPA MLVVTYEGEH RHSPGPMPMQ  300
MAPSPVPIPM PMGAPVAVAS VSAGNGHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21222293272WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3683600.0EF368360.1 Triticum aestivum WRKY transcription factor (WRKY68-a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447056.11e-142hypothetical protein SORBIDRAFT_06g027710
SwissprotQ9SV155e-99WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLW5APT00.0W5APT0_WHEAT; Uncharacterized protein
STRINGGRMZM2G071907_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-53WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]